FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487574
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42600.8737135286130926No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19040.3905048259341146No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15270.3131832296225804No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12290.25206430203415275No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9750.19996964563327824No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7320.15013105702929197No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7230.14828518337729246No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7070.14500363021818224No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6190.12695508784307613No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5820.11936649616263377No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5770.11834101080041184No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5650.11587984593107918No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5640.11567474885863478No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5140.1054198952364154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)