FastQCFastQC Report
Sun 21 May 2023
EGAF00007934941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515730
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47290.9169526690322456No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15190.29453396156903805No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8990.1743160180714715No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8690.1684990208054602No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6770.131270238302988No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6220.12060574331530065No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5760.11168634750741667No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5610.10877784887441103No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5530.10722664960347468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)