FastQCFastQC Report
Sun 21 May 2023
EGAF00007934942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517130
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG36540.706592152843579No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG26690.5161178040338019No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG25790.4987140564268172No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16060.3105602072979715No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12930.25003384062034695No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG11150.2156130953531994No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10950.2117455958849806No Hit
GACTTTCGGACCGGCGGTCAGCAGAGCCGCGCCTTTAGTGGTCA9300.1798387252721753No Hit
CAGACCTGCATCCGCGATTGCATACGCACCGTAGTCAGTGGAAC8750.1692031017345735No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8340.16127472782472493No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7900.1527662289946435No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7660.14812522963278094No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7270.14058360566975422No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5760.1113839846847021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)