FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517130
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG36340.7027246533753602No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG28300.5472511747529635No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28250.5462842998859088No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG25440.4919459323574343No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16070.31075358227138244No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG12250.23688434242840292No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10130.19588884806528337No Hit
GACGTGACGGATACCGTGGTTGTTAACATTA9350.18080560013922997No Hit
GTTAAACCGGATGCTGGCGTTAACGATGGCG8590.16610910215999847No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8360.16166147777154682No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8160.157793978303328No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7770.1502523543403013No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7610.14715835476572622No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5850.11312435944540059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)