FastQCFastQC Report
Sun 21 May 2023
EGAF00007934946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460940
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26680.5788171996355275No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24780.5375970842192043No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19670.42673666854688247No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19240.41740790558424085No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16460.3570963682908838No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG14790.32086605631969456No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13770.29873736278040525No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13740.2980865188527791No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC13130.2848526923243806No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA13020.2824662645897514No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12990.2818154206621252No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12890.27964594090337136No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12300.26684601032672367No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11960.25946977914696057No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10850.2353885538247928No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC10760.23343602204191435No Hit
CTGTGCGCGGTCGCCGCTACCCGGAGACACCAGACCGCCCGGCA10230.22193777932051892No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9800.2126090163578774No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9800.2126090163578774No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9780.2121751204061266No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9780.2121751204061266No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT9430.20458194125048812No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8460.18353798759057577No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8430.18288714366294961No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7410.16075845012366036No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6810.14774157157113724No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6760.14665683169176033No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6430.1394975484878726No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6080.13190436933223415No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5960.1293009936217295No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5830.1264806699353495No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5410.11736885494858333No Hit
ACCGCGAGACTGTGCGTTGTTCACCGCGTGGTGCGCGTCGGATT5280.11454853126220332No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5180.11237905150344948No Hit
GGCAACGTTGGTACAAACACGAGCGCCGTTACCGCTAGAGAAGC5120.11107736364819715No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG4750.1030502885408079No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT4710.10218249663730637No Hit
AGCAATACCTTCGTCGATCGCGCCTGCGCTCAGATCGGTTGCCA4700.10196554866143098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)