FastQCFastQC Report
Sun 21 May 2023
EGAF00007934947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460940
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40980.8890528051373281No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36200.7853516726688939No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31230.6775285286588276No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27390.5942205059226798No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG22210.4818414544192302No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20980.4551568533865579No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18000.39050635657569316No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16350.3547099405562546No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14390.3121881372846791No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14040.30459495812904064No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG14020.3041610621772899No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13920.301991582418536No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13260.2876730160107606No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12900.27986288887924676No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG12330.2674968542543498No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11120.2412461491734282No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT10910.2366902416800451No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10380.22519199895864972No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG10290.22323946717577123No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10020.21738187182713586No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9910.21499544409250665No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG9750.21152427647850047No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9600.20827005684036967No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9090.19720571007072504No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8780.1904803228185881No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8550.18549051937345426No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8260.17919902807306806No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7900.17138890094155423No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6440.139714496463748No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6390.13862975658437107No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6320.13711112075324336No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5920.12843320171822797No Hit
AAGGAATCCGTTGCAAAAAGCGAAGCTGGCG5800.12582982600772336No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5590.12127391851434026No Hit
CTGTCCGACGAAGAGCGTGAAACCCTGGCAA5470.11867054280383564No Hit
TCCGAAAAATCTGAAAAATCTGACCGTAAAA5320.11541632316570487No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4690.1017486006855556No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT4690.1017486006855556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)