FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484049
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19080.39417496988941203No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13700.2830291974572822No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10400.2148542812814405No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9950.20555770180291666No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9480.19584794101423614No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9450.19522816904900123No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8120.16775161192358626No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7530.15556276327396606No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7050.14564641183020727No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6950.1435805052794242No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6660.13758937628215326No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6300.13015211269933416No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5750.11878962667002721No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5720.1181698547047923No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5130.10598100605517209No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5090.10515464343485888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)