FastQCFastQC Report
Wed 31 May 2023
EGAF00007934951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485359
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA18080.372507772597191No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12970.26722487890406893No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10810.22272173793006825No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10730.22107347344954972No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9700.19985206826287344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9480.19531934094144748No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8000.1648264480518544No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7090.14607743958595598No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6780.1396904147239466No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6730.1386602494236225No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6320.13021289396096497No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6210.127946530300252No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5770.11888107565739998No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5600.11537851363629809No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5240.10796132347396462No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4980.10260446391227936No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4890.100750166371696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)