FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483868
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16930.3498888126513843No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC16140.33356204584721455No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9440.1950945299131168No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8580.1773210875693371No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8510.17587441202972712No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7070.14611422950060762No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6970.14404755015830764No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6790.14032752734216772No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6400.13226747790719784No Hit
CAGAGTGGTCAGTTCGCGAACACGGCGGGTACCACGTACAATAC5970.12338075673530799No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5760.11904073011647805No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5540.11449403556341813No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5260.10870733340497822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)