FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506601
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG25110.495656344934179No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19510.3851157024956524No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG19330.3815626104172712No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16980.33517501939396094No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11550.22799007502946103No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11380.22463437695543434No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10900.21515946474641778No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10760.2123959486854546No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7620.15041423131813794No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7610.15021683731378344No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7600.15001944330942893No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7540.14883507928330184No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6810.1344253169654225No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6600.13028004287397774No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG6510.12850349683478715No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5210.10284227626870061No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5130.10126312423386452No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5120.10106573022951No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5080.10027615421209196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)