FastQCFastQC Report
Wed 31 May 2023
EGAF00007934955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506601
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25040.49427458690369735No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG24670.4869710087425805No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20700.40860558901383925No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG19010.3752460022779268No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16970.3349776253896064No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15100.29806494657531274No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11530.22759528702075202No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11090.21890995082915352No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9790.193248730263067No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9120.1800233319713147No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8420.16620575166649887No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8260.1630474475968267No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7660.151203807335556No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7350.14508459320056613No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6920.1365966510133221No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG6880.13580707499590408No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6160.12159470668237923No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5410.10679015635579085No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5330.10521100432095475No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5270.1040266402948277No Hit

[OK]Adapter Content

Adapter graph