FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493379
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44750.9070106348263708No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23250.4712401622282262No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG23110.4684025870578197No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19290.39097732169387023No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG17580.35631836782676196No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15880.32186209790039705No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13540.27443405576645946No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10940.22173623117319546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10040.20349467650629638No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8670.1757269766244611No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8070.16356594017986173No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7700.1560666343723588No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7550.1530263752612089No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7440.15079685191303238No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG6360.1289069863127535No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6240.1264747790238336No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6220.12606941114234696No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5920.11998889292004727No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5320.10782785647544789No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)