FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487371
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14190.2911539668958555No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8720.17891913962874278No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8500.17440512463810937No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7180.14732103469430885No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5760.11818511975476588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)