FastQCFastQC Report
Sun 21 May 2023
EGAF00007934970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490756
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24640.5020825012837337No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22290.4541971977927932No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21680.4417673956100384No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT18860.38430503142090977No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT16830.3429402798946931No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10710.21823472356935014No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9020.1837980585056525No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8370.17055318732730726No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7640.15567817815778107No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7360.14997269518864773No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6210.1265394615654215No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA6190.12613192706762627No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6150.1253168580720358No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6020.12266788383636675No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5740.1169624008672334No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5730.11675863361833579No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5550.11309082313817864No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5520.11247952139148579No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5370.10942301265802148No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5220.10636650392455721No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5060.10310622794219532No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5030.10249492619550246No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4920.10025348645762865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)