FastQCFastQC Report
Sun 21 May 2023
EGAF00007934971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490756
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52761.0750760051838388No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21600.4401372576188574No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA20290.41344374801326933No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG17480.35618515107303833No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10840.2208836978050192No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9880.20132204191084777No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9820.20009943841746203No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9090.18522442924793583No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8640.17605490304754298No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7370.15017646243754534No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6930.14121070348605008No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6500.13244871178345247No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA6380.13000350479668105No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6270.12776206505880722No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5840.11900007335620962No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5820.11859253885841436No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5570.11349835763597388No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5500.11207198689369055No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5430.11064561615140721No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5330.10860794366243103No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5120.10432883143558101No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4990.10167985719991197No Hit

[OK]Adapter Content

Adapter graph