FastQCFastQC Report
Wed 31 May 2023
EGAF00007934972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479218
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23440.4891302079638077No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21550.449690954847272No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21210.44259606275223384No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT18780.3918884516024022No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT16880.35224052518895366No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10870.22682787374430843No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9350.19510953261354957No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG9080.18947535359690162No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7770.1621391517013134No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6380.13313356343042207No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6280.13104683046129317No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA6110.12749938441377412No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5990.12499530485081947No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5740.11977847242799727No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5540.11560500648973955No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5080.10600603483174671No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5060.10558868823792095No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5030.10496266834718229No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5010.10454532175335651No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4980.10391930186261784No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4880.10183256889348896No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4880.10183256889348896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)