FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479218
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51821.0813450246025818No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45140.941951262264773No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20520.42819760526524464No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA19770.4125471079967781No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG16850.351614505298215No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10950.22849726011961152No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10260.21409880263262232No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9670.201787078114762No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG9130.19051872008146606No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6240.13021213727364164No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6210.129586117382903No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6170.12875142419525143No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6110.12749938441377412No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA5840.12186520539712614No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5310.11080552066074312No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5280.11017950077000446No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5140.10725807461322405No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5100.10642338142557248No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5030.10496266834718229No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5020.1047539950502694No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4960.10350195526879206No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4910.10245858878422764No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4900.10224991548731475No Hit

[OK]Adapter Content

Adapter graph