FastQCFastQC Report
Wed 31 May 2023
EGAF00007934974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431659
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18880.43738228555410635No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT16890.39128108066784195No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13100.30348029347239375No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12480.2891171040103415No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12070.2796188658176941No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10380.24046759131629367No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9210.21336286281532416No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8300.19228140731457005No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8280.1918180786222458No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7890.1827831691219226No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7670.1776865535063557No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7210.1670299935828976No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6210.14386355896668435No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT5670.13135368427392918No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5630.13042702688928065No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5440.12602540431220013No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5340.1237087608505788No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4550.10540727750377034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)