FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007934975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431659
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24090.5580794099045774No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17310.4010109832066515No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13790.31946513335758087No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13670.31668516120363527No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13370.3097352308187713No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11550.26757231981726315No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9100.21081455500754068No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8930.20687626112278446No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8900.20618126808429801No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8620.1996946663917583No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7830.18139318304494984No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7620.17652823177554505No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6960.1612383849288443No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6890.15961673450570937No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6100.1413152511589009No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5890.13645029988949609No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5750.13320699904322625No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5740.13297533469706413No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5400.1250987469275516No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5330.12347709650441668No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4990.11560050873490417No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4790.11096722181166152No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4670.10818724965771594No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4440.10285896969598689No Hit

[OK]Adapter Content

Adapter graph