FastQCFastQC Report
Sun 21 May 2023
EGAF00007934977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435298
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24110.5538734384260897No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17620.4047801735822356No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14320.3289700389158691No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13530.3108215521321026No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13230.30392972170788746No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11400.2618895561201751No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9960.2288087700839425No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9180.21089001098098312No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9150.21020082793856165No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8860.20353872519515365No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8550.19641716709013135No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7810.17941731871040068No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7320.1681606623508493No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6940.1594310104801768No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6420.1474851710782039No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6150.14128252369641028No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6140.1410527960156031No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5630.12933668429443737No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5560.12772859052878718No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5020.11532329576519992No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4920.11302601895712822No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4900.11256656359551387No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4750.10912064838340631No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4480.10291800100161268No Hit

[OK]Adapter Content

Adapter graph