FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468710
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16470.35138998527874377No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13320.28418425038936657No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11160.2381003178937936No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10050.21441829702801307No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8860.18902946384758165No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8780.18732265153293082No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8760.1868959484542681No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8650.18454908152162317No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT8070.17217469224040452No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7970.17004117684709094No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6120.13057114207079004No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6040.12886432975613918No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5330.11371637046361291No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5130.10944933967698577No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5020.10710247274434086No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4840.10326214503637643No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4840.10326214503637643No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4760.1015553327217256No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4710.1004885750250688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)