FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456903
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12220.2674528291562979No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11440.2503813719761087No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8190.17925030039198692No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8070.1766239223642655No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7810.17093343663753577No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7490.1639297618969453No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7150.15648835748506795No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6200.13569619809894004No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5570.1219077134534026No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5380.117749281576177No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5310.11621722772667284No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5230.11446630904152523No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4870.10658717495836097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)