FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007934983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397893
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21070.5295393485183203No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA19660.4941026858979676No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17510.44006805849813896No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15720.39508108963967703No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG12510.31440613431249104No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10370.2606228307610337No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9980.2508212006745532No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9450.23750103671087452No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8950.22493484429230975No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8760.22015969117325512No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8680.21814910038628474No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8570.21538453805420052No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7210.18120449467570426No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6420.1613499106543719No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6390.160595939109258No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6190.1555694621418321No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6030.15154828056789135No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5990.15054298517440617No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5690.14300326972326732No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5670.14250062202652472No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5510.13847944045258398No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5360.13470958272701455No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5310.13345296348515806No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5200.1306884011530738No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5160.12968310575958863No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5070.12742119112424696No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5020.1261645718823905No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4610.11586029409916736No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA3980.10002689165177572No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)