FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007934985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452234
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42790.9461915733889978No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19000.42013647801801723No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17090.37790170575410076No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16790.37126797189065835No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12680.2803858179614978No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11250.24876501987908914No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9720.21493297717553303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9560.2113949857816971No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9550.21117386131958232No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9370.20719362100151692No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8930.1974641446684681No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8560.1892825395702225No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7830.17314045383584603No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7620.16849684013143637No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7220.15965186164684653No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5940.13134793049615906No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5750.12714656571597888No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5530.12228182754945448No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4640.10260175042124212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)