FastQCFastQC Report
Wed 31 May 2023
EGAF00007934986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461900
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG29330.6349859276899762No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25310.5479541026196146No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24560.5317168218229055No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG22320.4832214765100671No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19330.41848885040051953No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17890.38731327127083787No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG16740.3624161073825503No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG15340.33210651656202644No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA12440.269322364148084No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12010.2600129898246374No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11700.2533015804286642No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA10850.2348993288590604No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7510.1625893050443819No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6760.14635202424767266No Hit
GGTCAGTGGATCCAGTTCGCCGCGTGCTGCACGAGCGGTCAGGT6350.13747564407880491No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG6280.13596016453777873No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6120.13249621130114744No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5570.12058887205022734No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5310.11495994804070146No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4820.10435159125351808No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4690.10153712924875515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)