FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461900
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA54531.1805585624594068No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43550.9428447715955834No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC32100.6949556180991556No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG29360.6356354189218445No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG28750.6224290972071878No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26150.5661398571119289No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24800.5369127516778524No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC19140.41437540593201994No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17740.38406581511149596No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT10690.2314353756224291No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7620.16497077289456594No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7190.1556613985711193No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG6660.1441870534747781No Hit
TCCGCGGCCGAAAAAACCAAAGGTAACGCGA6630.14353756224290973No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC6530.14137259147001516No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6040.13076423468283177No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5870.12708378436891102No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC5650.12232084866854298No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5530.11972288374106949No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5330.11539294219528036No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5060.10954752110846505No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5030.10889802987659666No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG4810.10413509417622861No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4760.10305260878978133No Hit

[OK]Adapter Content

Adapter graph