FastQCFastQC Report
Wed 31 May 2023
EGAF00007934988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464398
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG29360.632216331681015No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25500.5490979719981568No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG25190.5424226633189635No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24680.5314407038790003No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18200.39190521923005694No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17640.3798465970999014No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG16720.36003600360036003No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG15870.34173273786708813No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12510.26938100508615453No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA12280.26442835671126924No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11350.24440243067368936No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA10200.21963918879926272No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7300.15719275276809977No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6810.14664145840421364No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG6620.14255014018148227No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6480.13953548464894336No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6220.13393683865994255No Hit
GGTCAGTGGATCCAGTTCGCCGCGTGCTGCACGAGCGGTCAGGT5970.12855352520898022No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5200.11197291978001628No Hit
AACGCTCTGGGTGTGTTTCGGACCAGAGGAAACGCTGGCCAGGG4750.1022829555682841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)