FastQCFastQC Report
Sun 21 May 2023
EGAF00007934989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464398
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA55201.1886356099724806No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42100.9065499851420548No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC31710.6828194781200608No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG29980.6455669490394015No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG29570.6367383149798234No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25820.5559886132153885No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23160.49871015809714936No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC19530.4205444467891765No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18080.38932122877359504No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT10360.2230845094078786No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7390.1591307456104462No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7210.15525475992575333No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG7030.15137877424106047No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC6860.1477181210944061No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6490.13975081718698185No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6490.13975081718698185No Hit
TCCGCGGCCGAAAAAACCAAAGGTAACGCGA6480.13953548464894336No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC5640.12144755145370996No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5320.1145569102364782No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5140.11068092455178533No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG5090.10960426186159286No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4880.1050822785627845No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4670.10056029526397615No Hit

[OK]Adapter Content

Adapter graph