FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425680
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20470.4808776545762075No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG18900.44399548956962975No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18220.4280210486750611No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16370.38456117271189627No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14810.3479139259537681No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12560.2950573200526217No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11340.26639729374177784No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11130.26146401052433754No Hit
TTCAACGACAGCAGCAGAGTGCAGCACACCACGCAGCGGCAGGC10040.23585792144333773No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9670.22716594625070474No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9450.22199774478481488No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7620.17900770531854915No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT7180.16867130238676942No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7090.16655703815072354No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6610.15528096222514565No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT5160.12121781619996241No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG5150.12098289795151287No Hit
CTGAGACAGGGAGGCAGCTTCCAGTGCACGCAGGGTAGCCAGCA4700.11041157677128359No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4640.10900206728058634No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG4510.10594813005074233No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4290.10077992858485248No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4270.10031009208795338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)