FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425680
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39060.9175906784439015No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG22490.5283311407630145No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22290.5236327757940237No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG22220.5219883480548769No Hit
ATGTCCAACATGGACATCGATGGTATTAACA18710.43953204284908853No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16050.377043788761511No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15150.3559011464010524No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12890.3028096222514565No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11060.25981958278519074No Hit
AAAGCACGTCAGACTATCGAAGGCCTGCGCG10120.23773726743093407No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9550.2243469272693103No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8380.19686149220071417No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT7460.17524901334335652No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7140.16773162939297126No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7020.1649126104115768No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6980.1639729374177786No Hit
ATGTTCGAGGAACCGGAATGGGCTGAAGCGG5690.133668483367788No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5480.1287352001503477No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5420.12732569065965044No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5300.12450667167825596No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC5220.12262732569065964No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC4840.11370043224957714No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4780.1122909227588799No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC4420.10383386581469649No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4290.10077992858485248No Hit
GAACTGGCTCGCCGTCAACAGGAAGAACGTA4270.10031009208795338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)