FastQCFastQC Report
Wed 31 May 2023
EGAF00007934993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447054
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25680.5744272503992807No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17750.39704375757738436No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14140.31629288631798397No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13610.30443749524665925No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11450.2561211844654113No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9940.22234450424333524No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8630.19304155650100435No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6740.15076478456741244No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6430.14383049922380742No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5300.11855391071324717No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5160.11542229797742555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)