FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459780
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACACGCGGTACCGGGCGCGGGGTACGCGGTTTCTTAGTCGGAC18100.39366653616947234No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13180.2866588368350081No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12500.2718691548131715No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11970.26034190264909307No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7860.17095132454652226No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7670.16681891339336205No Hit
GAAAGTATCATCCGCCGCTTCGTTAGCGGTGCCGCCTTGAGACT6860.14920179216146853No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6360.13832702596894167No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6290.1368045587019879No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG6080.1322371569011266No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5980.13006220366262125No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5960.12962721301492017No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5540.12049240941319761No Hit
GCGGAAGGCATCGGAGTCATAGCGACGCTTGTCCTGTGCGATGT5430.1180999608508417No Hit
GCGCTGGTTCGGTTCACCACCACGCGGCACGCCGCTGGTGGTGG5380.11701248423158903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)