FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459780
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTACGTCGAACCGACTGCAGTTGCTACTC17360.3775718822045326No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13090.28470137892035324No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12120.2636043325068511No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11740.2553395102005307No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9940.21619035190743402No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8020.17443124972813084No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7670.16681891339336205No Hit
GACATGCCATCCTCTGACTTCGACCCGTACG7240.15746661446778895No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6950.15115925007612335No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6830.14854930618991694No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6420.1396319979120449No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6400.1391970072643438No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6280.13658706337813736No Hit
ACTACTACCACTCGTCGTCCGACCAAAAAAC6130.1333246335203793No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5980.13006220366262125No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG5940.1291922223672191No Hit
GAAAAACAGCGTAAACAAAAAGATCTGATTA5790.12592979250946104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)