FastQCFastQC Report
Wed 31 May 2023
EGAF00007934996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535185
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20080.37519736165998674No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19100.35688593663873236No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18360.3430589422349281No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17960.3355848912058447No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17420.3254949223165821No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16870.31521810215159246No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13980.26121808346646486No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11530.21543952091332905No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10860.20292048543961433No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10420.19469902930762262No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10250.19152255762026213No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9870.1844222091426329No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9800.18311425021254332No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9540.1782561170436391No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9220.17227687622037238No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8400.15695507161075142No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8390.15676822033502436No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7970.14892046675448678No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7890.14742565654867007No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7690.14368863103412838No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7490.13995160551958669No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7310.13658828255649916No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6730.12575090856432822No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6420.1199585190167886No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6420.1199585190167886No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6290.11752945243233648No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5960.11136336033334268No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5870.1096816988517989No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5810.1085605911974364No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5390.10071283761689882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)