FastQCFastQC Report
Wed 31 May 2023
EGAF00007934997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535185
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA38680.7227407345123649No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26830.5013219727757691No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA25300.4727337275895251No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23340.43611087754701644No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20590.38472677672206806No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19340.36137036725618243No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16410.30662294346814656No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14860.2776609957304484No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13720.25635995029756065No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11850.22141876173659578No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11030.2060969571269748No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10980.20516270074833937No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10830.20235993161243307No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG10600.19806235227071015No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10010.1870381270028121No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9920.18535646552126833No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9060.16928725580873905No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8490.15863673309229517No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7780.14537029251567216No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7760.144996589964218No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7530.140699010622495No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7250.13546717490213664No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6990.13060904173323243No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6530.12201388304978653No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6320.11809000625951774No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6320.11809000625951774No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6270.11715574988088232No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6260.11696889860515523No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6040.11285817053915935No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5880.10986855012752599No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5780.10800003737025515No Hit
GGCGACACCGTCAAAATCTCTCTGAACTATA5490.10258135037416968No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5370.10033913506544466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)