FastQCFastQC Report
Wed 31 May 2023
EGAF00007934998

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934998
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504335
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18260.3620609317219705No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17640.34976751563940633No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17120.33945690860241706No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16970.33648269503405476No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16760.3323187960383475No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16070.3186374136238809No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13580.2692654683890668No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10690.21196228697195316No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10120.20066027541217643No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9810.19451356737089434No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9750.1933238819435494No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9660.19153935380253206No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9070.17984078043364035No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8970.17785797138806547No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8700.17250438696501333No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8200.162590341737139No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7850.15565051007762698No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7420.14712443118165505No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7350.14573646484975264No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7340.14553818394519516No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7250.1437536558041778No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6830.13542585781276334No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6660.13205508243528608No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6590.13066711610338366No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6260.12412384625298661No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6150.12194275630285425No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5860.11619261007068714No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5680.1126235537886524No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5350.10608028393825533No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5270.10449403670179543No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5050.10013185680153072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)