FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504335
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48020.9521449036850507No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36340.7205528071619063No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25570.5070042729534932No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23220.4604082603824839No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21040.4171830231889518No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18660.36999216790427No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18240.36166436991285555No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16170.32062022266945583No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13830.274222491003004No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12320.2442820744148235No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11020.2185055568223502No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10150.20125511812584887No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9890.19609981460735423No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9510.18856514023416973No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9430.18697889299770987No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9060.17964249952908284No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8260.16378002716448392No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7920.15703847640952937No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7630.15128833017736226No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7340.14553818394519516No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7040.13958975680847058No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6980.13840007138112564No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6450.12789118343957886No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6250.12392556534842913No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5970.1183737000208195No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5810.1152012055478997No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5710.11321839650232485No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5560.11024418293396254No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5500.10905449750661762No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5260.10429575579723795No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5250.10409747489268045No Hit
GGCGACACCGTCAAAATCTCTCTGAACTATA5140.10191638494254811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)