FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459230
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC16080.3501513402870022No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14780.32184308516429677No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12010.2615247261720707No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10040.21862683187074014No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8210.1787775188903164No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7920.17246260043986675No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7510.16353461228578273No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7380.16070378677351219No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7060.15373560089715393No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6970.1517757986194282No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5560.12107222960172463No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5190.11301526468218541No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4910.10691810204037193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)