FastQCFastQC Report
Wed 31 May 2023
EGAF00007935001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459230
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43230.9413583607342726No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17560.38237919996515907No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15660.34100559632428196No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15470.3368682359601942No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14660.31923001546066243No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10090.2197156109139211No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8940.19467369292075867No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8420.1833503908716765No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7370.160486030964876No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7100.1546066241316987No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5640.12281427607081419No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5380.1171526250462731No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5260.11453955534263877No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4960.10800688108355291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)