FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480917
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15010.3121120692344001No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14010.29131846035802433No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11920.24785981780639904No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10380.21583766013678038No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6780.14098066818182764No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6620.13765369076160752No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5700.11852357059534181No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4890.10168074740547746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)