FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488979
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15140.30962474871108986No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14970.3061481167902916No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12240.2503174982974729No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10770.22025485757057053No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7050.14417797083310324No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6760.13824724579174155No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6050.12372719482840776No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4940.10102683346319577No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4930.10082232570314881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)