FastQCFastQC Report
Sun 21 May 2023
EGAF00007935009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488979
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39790.8137363772268339No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30550.6247712069434475No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15200.3108517952713716No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11220.22945770677268348No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7000.14315543203286848No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6290.12863538106953468No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6200.1267948112291121No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5080.10388994210385313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)