FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466192
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19820.42514672066444725No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19600.42042763496585095No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18700.40112228438068437No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14160.30373751587328823No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12680.2719909393554587No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12500.26812986923842536No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10980.23552527713903282No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10300.22093901225246249No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9030.1936970175378385No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7180.15401379689055153No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6350.1362099735731201No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6280.13470844630538492No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6240.13385043072382194No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5430.11647561519717198No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5280.11325805676631089No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4740.10167484641521089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)