FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465645
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39110.8399102320437243No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20460.43939052282318075No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16590.35627999871146476No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14410.309463217687294No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12700.2727399628472334No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11660.25040535171643635No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10320.22162806429790932No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8510.18275725069527216No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7760.16665055997594735No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6080.13057157276465978No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4950.10630415874754373No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4690.10072050596484446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)