FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498783
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22120.44347942893001563No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17920.3592744740698861No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15720.31516711676219916No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14010.2808836708548607No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13550.2716612234177989No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12650.2536173045191997No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12210.24479583305766234No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9010.1806396769737541No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8860.17763235715732092No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6790.1361313436905428No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5860.11748596082865695No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5540.11107034522026614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)