FastQCFastQC Report
Sun 21 May 2023
EGAF00007935021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431521
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36080.8361122633660935No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12220.2831843641445028No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10040.23266538592559807No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9970.2310432169002204No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6030.13973827461467692No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5630.13046873732680447No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5560.12884656830142682No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5320.12328484592870334No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5090.11795486198817672No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4690.10868532470030426No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4600.10659967881053298No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4350.10080621800561271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)