FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504501
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14410.28562876981413315No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13060.2588696553624274No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9220.18275484092202No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8220.1629332746614972No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8200.16253684333628673No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7680.1522296288808149No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7550.14965282526694693No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7430.14727423731568423No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7040.1395438264740803No Hit
ATGCGTATCAAACGTACCTCCAACCGTTCCA6980.13835453249844895No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6770.13419200358373917No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6600.1308223373194503No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5840.11575794696145299No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5680.11258649635976935No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5310.10525251684337593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)