FastQCFastQC Report
Wed 31 May 2023
EGAF00007935025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463616
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27680.5970458310325787No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19680.42448923246824966No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12560.2709138597459967No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8740.18851808393152955No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7840.1691054665930425No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6980.15055563224737714No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6500.1402022363335174No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6230.13437845113197128No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5890.12704479569298732No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5760.12424075096631695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)