FastQCFastQC Report
Sun 21 May 2023
EGAF00007935031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427002
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT100992.365094308691763No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34260.8023381623505277No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20830.4878197291815964No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC18350.4297403759232978No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15500.362995957864366No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13100.3067901321305287No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12170.28501037465866674No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11920.2791556011447253No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11790.2761111189174758No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11650.27283244574966864No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9750.2283361670437141No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9360.2192027203619655No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9200.215455665313043No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8580.2009358269984684No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8580.2009358269984684No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8410.19695458100898824No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7180.16814909532039662No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7040.16487042215258943No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7000.16393365839035884No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6420.1503505838380148No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6290.1473061016107653No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6200.14519838314574637No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6050.14168551903738155No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5850.13700170022622843No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5730.1341914089395366No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5510.12903920824726817No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5500.1288050173067105No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5210.1220134800305385No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4910.11498775181380883No Hit
GACTCCGAAGGCCACAGCGAGGACTCTGATA4900.11475356087325117No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4460.10444915948871435No Hit
ATGAAACCGCGCGCGCGTCGCCGTAAACGTG4450.10421496854815669No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4380.10257563196425311No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4310.10093629538034951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)