FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473700
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18450.38948701709943No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14690.3101118851593836No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13220.2790795862360143No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12990.27422419252691577No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12400.26176905214270635No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12380.2613468439940891No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11530.2434029976778552No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11080.23390331433396663No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10400.2195482372809795No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9340.19717120540426433No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8610.181760607979734No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8290.17500527760185772No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8210.17331644500738866No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8200.17310534093308003No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7520.1587502638800929No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7070.14925058053620435No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6020.12708465273379776No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5970.12602913236225458No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5890.12434029976778553No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5630.11885159383576104No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5230.11040743086341567No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5150.10871859826894659No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5010.1057631412286257No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4910.10365210048553937No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4880.10301878826261346No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4840.10217437196537893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)